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Is a faction within the CIA undermining President Trump’s peace efforts in Ukraine?

There is an old Washington habit of reading a flattering magazine profile and seeing only the flattery. Larry C. Johnson, who spent years at the Central Intelligence Agency and later in the State Department’s counterterrorism office, would rather we read the fine print. In a recent Substack essay, he takes Shane Harris’s October 23 profile of CIA leadership in ‘The Atlantic’ and turns it over to see what is underneath. As Johnson reads it, the piece confirms something official Washington has spent four years refusing to say plainly: through the CIA, the United States is not merely supplying Ukraine but helping it fight Russia.
That claim deserves serious attention. If it is accurate, it raises an uncomfortable question. Is there a faction inside the American intelligence community whose operational priorities are pulling against the President’s stated goal of ending this war?
According to Harris’s account, as Johnson summarizes it, Ukraine’s deep strikes inside Russia are being carried out with information the CIA provides. American spy satellites give Kyiv early warning of incoming Russian missiles and drones. A retired senior officer who travels to Ukraine frequently reportedly told Harris that among U.S. personnel on the ground, “the CIA is in the lead.” A Baltic intelligence officer allegedly went further, saying the agency’s operations against Russia are now “much more aggressive” than they were under Joe Biden. Officers in the Special Activities Center, the home of covert and paramilitary work, are described as among the happiest people at Langley because they have never been busier.
None of this began in 2025. The CIA helped build Ukraine’s modern intelligence services after Russia seized Crimea in 2014. By any reasonable measure, this has been the agency’s long war for more than a decade.
This is where the story turns from interesting to awkward. The refinery strikes that American intelligence reportedly helps enable have done real damage to Russia’s economy. The International Energy Agency estimates that in the first eight months of this year, Ukraine hit a Russian refinery about once every three days. Those refineries produce diesel, and the world is short of diesel. The IEA projects that the shortage will last well into 2027.
Diesel moves trucks, tractors, freight trains and cargo ships. When it gets expensive, everything gets expensive. According to Harris, President Trump blames the refinery attacks for the price spike, wants them stopped, and has threatened to cut off intelligence support to Kyiv unless the strikes end.

So consider the full picture. The President is trying to broker a peace and ease prices for American families. Meanwhile, by these accounts, operations supported by an arm of his own government are intensifying a campaign that raises those prices and hardens Moscow’s position at the negotiating table. You do not need to believe in a cabal of rogue spies to see that something is out of alignment.
The word “faction” conjures images of plotters in a basement at Langley. The reality is probably more mundane and, in some ways, more worrying. Large bureaucracies develop their own gravity. Programs built over eleven years create careers, partnerships, budgets and a sense of mission. Relationships with foreign services take on a life of their own. People who have spent a decade helping Ukraine resist Russia do not easily accept that the policy goal has shifted from pressure to settlement.
That is not necessarily treason or sabotage. It is institutional momentum. But momentum that runs against the elected President’s direction produces the same result as deliberate obstruction: a foreign policy the voters did not choose.
Johnson’s most valuable contribution is historical. Harry Truman did not create the CIA in 1947 to run paramilitary campaigns. He created it to collect and analyze foreign intelligence and to tell the President the truth, so that no commander in chief would again be blindsided as Franklin Roosevelt was at Pearl Harbor. Covert action came in through the back door a year later, when National Security Council directive NSC 10/2 authorized secret operations. Ever since, as Johnson puts it, “the clandestine tail has been wagging the analytic dog.”
Truman watched it happen and said so publicly. In a ‘Washington Post’ op-ed on December 22, 1963, a month after John F. Kennedy’s assassination, he wrote that he was disturbed by how far the agency had strayed from its intended role. “I never had any thought that when I set up the CIA that it would be injected into peacetime cloak and dagger operations,” he wrote. The agency, he warned, “has become an operational and at times a policy-making arm of the government.” In founding it, he said, “the most important thing was to guard against the chance of intelligence being used to influence or to lead the President into unwise decisions.” He asked that the CIA be “restored to its original assignment as the intelligence arm of the President.”
Those words, written more than sixty years ago, read like a memo for this moment.
Director John Ratcliffe has spoken about returning the CIA to its roots. That instinct is the right one, and he may be uniquely placed to act on it. Truman’s own words define those roots more precisely than any modern mission statement could: an intelligence service that informs the President rather than steering him.
Taking that seriously would mean a few concrete things. Covert programs should be reviewed to confirm they serve current presidential policy rather than inherited momentum. Liaison relationships with foreign services should support American diplomacy, not run ahead of it. Analysts should feel free to give the White House unwelcome assessments, including assessments of what the agency’s own operations are costing. A director committed to the agency’s founding purpose has every reason to welcome that discipline, and every tool to impose it.
We do not need to prove the existence of a secret faction to recognize the danger. When an intelligence agency’s operations grow so large and so self-sustaining that they shape the battlefield the President is trying to wind down, the question of which sets American foreign policy is no longer theoretical.
Truman answered that question in 1963. The President sets it, and the intelligence community serves it. If peace in Ukraine is the goal, the first step may be making sure every part of the American government is working toward the same one.
By Ovidiu Stanica

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